Principal AI/Deep Learning Engineer

At Nautilus, we have a big and important mission: improve the health of millions by unleashing the potential of the proteome to accelerate drug development and enable a new world of precision and personalized medicine. We are developing a single-molecule protein analysis platform of unprecedented sensitivity, scale, and ease of use that we believe will democratize access to the proteome – one of the most dynamic and valuable sources of biological insight. To accomplish this, we are pursuing hard scientific problems with an entrepreneurial mindset and creating a world-class team of builders, innovators, and dreamers across a wide range of disciplines.

Requirements

• PhD or Master's degree in Data Science, Artificial Intelligence, Computer Science, Statistics, Mathematics, or a related field highly desired
• 8+ years of experience in designing, developing, and deploying machine learning models and data science solutions
• 4+ years in hands-on GenAI application development
• Experience developing and implementing bespoke deep-learning approaches
• Biological / proteomics context preferred but not required
• Strong background in data engineering, including data pipelines, ETL processes, and data warehouses supporting traditional and AI-driven applications
• Experience with MLOps: model deployment, monitoring, and lifecycle management in cloud or on-prem environments, debugging ML models
• Experience with explainable AI and inferential machine learning models preferred
• Familiarity with best practices in software engineering including code quality, testing, version control, and maintainability
• Experience leading cross-functional strategy and execution
• Strong problem-solver who collaborates well across disciplines
• Effective communicator with both technical and non-technical audiences
• Passionate about science and advancing human health

Benefits

• Generous Paid Time Off
• 401k Matching
• Retirement Plan
• Visa Sponsorship
• Four Day Work Week
• Generous Parental Leave
• Tuition Reimbursement
• Relocation Assistance